Tao Zhu, Yukuto Sato, Tetsuya Sado, Masaki Miya, and Wataru Iwasaki. MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in ten years. Molecular Biology and Evolution, 43, msad035. (2023)

Naoki Konno and Wataru Iwasaki. Machine learning enables prediction of metabolic system evolution in bacteria. Science Advances, 9, eadc9130. (2023)

Kazumori Mise and Wataru Iwasaki. Unexpected absence of ribosomal protein genes from metagenome-assembled genomes. ISME Communications, 2, 118. (2022)

Nanako Kanno, Shingo Kato, Moriya Ohkuma, Motomu Matsui, Wataru Iwasaki, and Shinsuke Shigeto. Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithm. STAR Protocols, 3, 101812. (2022)

Takao K Suzuki, Motomu Matsui, Sira Sriswasdi, and Wataru Iwasaki. Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) Model. Methods in Molecular Biology, 2569, 327-342. (2022)

Joel H. Nitta, Eric Schuettpelz, Santiago Ramírez-Barahona, and Wataru Iwasaki. An open and continuously updated fern tree of life. Frontiers in Plant Science, 13, 909768. (2022)

Arnon Plianchaisuk, Kazuya Kusama, Kiyoko Kato, Sira Sriswasdi, Kazuhiro Tamura, and Wataru Iwasaki. Origination of LTR retroelement-derived NYNRIN coincides with therian placental emergence. Molecular Biology and Evolution, 39, msac176. (2022)

Tsukasa Fukunaga and Wataru Iwasaki. Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families. Bioinformatics, 38, 4039–4041. (2022)

Taiki Adachi, Yasuhiko Naito, Patrick W. Robinson, Daniel P. Costa, Luis A. Hückstädt, Rachel R. Holser, Wataru Iwasaki, and Akinori Takahashi. Whiskers as hydrodynamic prey sensors in foraging seals. Proc Natl Acad Sci U S A, 119, e2119502119. (2022)

Asano Ishikawa, Shun Yamanouchi, Wataru Iwasaki, and Jun Kitano. Convergent copy number increase of genes associated with freshwater colonization in fishes. Philosophical Transactions of the Royal Society B: Biological Sciences, 377, 20200509. (2022)