Thanet Praneenararat*, Toshihisa Takagi, and Wataru Iwasaki*. Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era. BMC Genomics, 13(Suppl 7), S24. (2012) (*T.P., and W.Is. contributed equally to this work.)

Sanghwa Park, Susumu Yoshizawa, Chiura hiroshi xavier, Yuki Muramatsu, Yasuyoshi Nakagawa, Kazuhiro Kogure and Akira Yokota. Nonlabens marina sp. nov., a novel marine bacterium isolated from Pacific Ocean. Antonie Van Leeuwenhoek, 102, 669-676. (2012)

Susumu Yoshizawa, Yasuhiro Tsuruya, Youhei Fukui, Tomoo Sawabe, Akira Yokota, Kazuhiro Kogure, Melissa Higgins, Jeremy Carson and  Fabiano L. Thompson. Vibrio jasicida sp. nov., a member of the Harveyi clade, from marine animals (packhorse lobster, abalone, and Atlantic salmon). International Journal of Systematic and Evolutionary Microbiology, 62, 1864-1870. (2012)

Sanghwa Park, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure and Akira Yokota. Halioglobus japonicus gen. nov., sp. nov., and Halioglobus pacificus sp. nov., within the class Gammaproteobacteria, isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 62, 1784-1789. (2012)

Keisuke Yamada, Akira Kawanabe, Susumu Yoshizawa, Kentaro Inoue, Kazuhiro Kogure and Hideki Kandori. Anomalous pH Effect of Blue Proteorhodopsin. The Journal of Physical Chemistry Letters, 3, 800-804. (2012)

Susumu Yoshizawa, Akira Kawanabe, Hiroyasu Ito, Hideki Kandori and Kazuhiro Kogure. Diversity and functional analysis of proteorhodopsin in marine Flavobacteria. Environmental Microbiology, 14, 1240-1248. (2012)

Susumu Yoshizawa, Hajime Karatani, Minoru Wada and Kazuhiro Kogure. Vibrio azureus emits blue-shifted light via an accessory blue fluorescent protein. FEMS Microbiology Letters, 329, 61-68. (2012)

Sanghwa Park, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure and Akira Yokota. Aureitalea marina gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 62, 912-916. (2012)

Thanet Praneenararat*, Toshihisa Takagi, and Wataru Iwasaki*. Interactive, multi-scale navigation of large and complicated biological networks. Bioinformatics, 27, 1121-1127. (2011) (*T.P., and W.Is. contributed equally to this work.)

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, and Kiyoshi Asai. Generalized centroid estimators in bioinformatics. PLOS ONE, 6, e16450. (2011)